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SRX18965827: GSM6921748: WT_Avicel_1; Neurospora crassa; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 20.2M spots, 6.1G bases, 1.9Gb downloads

External Id: GSM6921748_r1
Submitted by: Tianjin institute of industrial biotechnology,Chinses Academy of Sciences
Study: The transcriptional factor Clr-5 is involved in cellulose degradation through regulation of amino acid metabolism in Neurospora crassa
show Abstracthide Abstract
Filamentous fungi are one of the primary degraders of plant biomass because of their ability to produce enzymes that break down complex polysaccharides. The production of cellulolytic enzymes in fungi is dependent on transcription factors. In this article, we identified a N. crassa Zn2Cys6 transcription factor Clr5 that regulates the expression of cellulase on cellulose. N. crassa ?clr5 exhibited a significant decrease in secreted proteins (~46%), endo-glucanase (~55%), xylanase (~33%), ß-glucosidase (~38%), and exocellulase (~40%) compared with the WT, while transcriptomic analysis revealed that clr5 was essential in cellulase expression. We also determined that clr5 is crucial in amino acid- Leucine and Histidine metabolism. When using Leucine or Histidine as solo nitrogen source, ?clr5 strain cannot grow as normally as WT, and the expression of most CAZyme genes were reduced obviously, which indicated nitrogen metabolism played an important role in cellulose degradation. Moreover, the function of Clr5 is conservative in M. thermophila, the other fungi with a capacity for biomass degradation. Overall design: mRNA profiles of Neurospora crassa exposed to Avicel.
Sample: WT_Avicel_1
SAMN32628940 • SRS16388629 • All experiments • All runs
Library:
Name: GSM6921748
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Mycelia were harvested by vacuum filtration with Whatman filter paper, frozen immediately in liquid nitrogen. Total RNA from frozen samples was isolated using TRIzol reagent and an additional clean-up was performed for DNA degradation using the RNeasy mini kit (Qiagen) RNA libraries were prepared for sequencing using standard Illumina protocols
Runs: 1 run, 20.2M spots, 6.1G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR2301002020,222,0796.1G1.9Gb2023-12-06

ID:
26106127

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